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Running ruminate

ruminate()
ruminate: Shiny app and module to facilitate pharamacometrics analysis

MB Module functions

MB_Server()
Model Builder State Server
MB_append_report()
Append Report Elements
MB_build_code()
Build Code to Generate Model
MB_del_current_element()
Deletes Current model
MB_fetch_catalog()
Fetches List of Available Models
MB_fetch_code()
Fetch Module Code
MB_fetch_component()
Fetch Selected Current Model Component
MB_fetch_current_element()
Fetches Current model
MB_fetch_mdl()
Fetch Model Builder Module Models
MB_fetch_state()
Fetch Model Builder State
MB_init_state()
Initialize MB Module State
MB_new_element()
New Model Building Model
MB_set_current_element()
Sets the Value for the Current model
MB_test_catalog()
Tests the Model Catalog
MB_test_mksession()
Populate Session Data for Module Testing
MB_update_checksum()
Update MB Module Checksum
MB_update_model()
Updates Current Element with rxode2 Model
mk_rx_obj()
Makes an rxode2 Object

CTS Module functions

CTS_Server()
Clinical Trial Simulator State Server
CTS_append_report()
Append Report Elements
CTS_del_current_element()
Deletes Current cohort
CTS_fetch_code()
Fetch Module Code
CTS_fetch_current_element()
Fetches Current cohort
CTS_fetch_ds()
Fetch Clinical Trial Simulator Module Datasets
CTS_fetch_sc_meta()
Fetches Simulation Parameter Meta Information
CTS_fetch_state()
Fetch Clinical Trial Simulator State
CTS_init_state()
Initialize CTS Module State
CTS_new_element()
New ===Module_Name=== cohort
CTS_set_current_element()
Sets the Value for the Current cohort
CTS_test_mksession()
Populate Session Data for Module Testing
CTS_update_checksum()
Updates CTS Module Checksum
fetch_rxinfo()
Fetches Information from an rxode2 Object
fetch_rxtc()
Extracts Timecourse and Merges Covariates
mk_subjects()
Fetches Information from an rxode2 Object
simulate_rules()
Rule-Based simulates

NCA Module functions

apply_route_map()
Applies Route Mapping to Dataset
dose_records_builder()
Builds Dose Records Dataframe
mk_table_ind_obs()
Creates Tables of Individual Observations from PKNCA Result
mk_table_nca_params()
Create Tabular Output from PKNCA Results
mk_figure_ind_obs()
Creates Figures of Individual Observations from PKNCA Result
NCA_Server()
Fetch Non-Compartmental Analysis State
NCA_add_int()
Adds Analysis Interval to Current Analysis
NCA_append_report()
Append Report Elements
NCA_fetch_PKNCA_meta()
Fetches PKNCA Metadata
NCA_fetch_ana_ds()
Fetch Analysis Dataset
NCA_fetch_ana_pknca()
Fetch PKNCA Results Object
NCA_fetch_code()
Fetch Module Code
NCA_fetch_current_ana()
Fetches Current Analysis
NCA_fetch_current_obj()
Fetches the Current Analysis Object
NCA_fetch_data_format()
Fetches Details About Data Requirements
NCA_fetch_ds()
Fetch Module Datasets
NCA_fetch_np_meta()
Fetches NCA Parameter Meta Information
NCA_fetch_state()
Fetch ruminate State
NCA_find_col()
Determines Default Column Name
NCA_init_state()
Initialize NCA Module State
NCA_load_scenario()
Loads Pre-Defined Scenario
NCA_mkactive_ana()
Fetch PKNCA Results Object
NCA_new_ana()
Initialize New Analysis
NCA_process_current_ana()
Processes Current Analysis to be Run
NCA_set_current_ana()
Sets Current Analysis
NCA_test_mksession()
Populate Session Data for Module Testing
nca_builder()
Builds NCA Code from ui Elements
run_nca_components()
Runs NCA for the Current Analysis