Takes the current state and object type and returns the currently selected object. For example if you have specified figure, it will look at the output figure selected and the figure number of that figure and return the ggplot object for that. by subject id highlighting of certain NCA aspects (e.g. points used for half-life)
Arguments
- state
NCA state from
NCA_fetch_state()- obj_type
Type of object to return (either "table" or "figure").
Value
List with a format that depends on the obj_type. For figures:
ggplot: ggplot object of the figure.
isgood: Return status of the function.
msgs: Messages to be passed back to the user.
For tables:
df: Dataframe of the current table.
ft: Flextable object of the current table.
notes: Any table notes to be included.
isgood: Return status of the function.
msgs: Messages to be passed back to the user.
Examples
# We need a state object to use below
sess_res = NCA_test_mksession()
#> → ASM: including file
#> → ASM: source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → ASM: dest: file.path("config","report.docx")
#> → ASM: including file
#> → ASM: source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → ASM: dest: file.path("config","report.pptx")
#> → ASM: including file
#> → ASM: source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → ASM: dest: file.path("config","report.yaml")
#> → ASM: State initialized
#> → ASM: module isgood: TRUE
#> → UD: including file
#> → UD: source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → UD: dest: file.path("config","report.docx")
#> → UD: including file
#> → UD: source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → UD: dest: file.path("config","report.pptx")
#> → UD: including file
#> → UD: source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → UD: dest: file.path("config","report.yaml")
#> → UD: State initialized
#> → UD: module checksum updated:897d952fecbc804999396a96f9df4b20
#> → UD: module isgood: TRUE
#> → DW: including file
#> → DW: source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → DW: dest: file.path("config","report.docx")
#> → DW: including file
#> → DW: source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → DW: dest: file.path("config","report.pptx")
#> → DW: including file
#> → DW: source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → DW: dest: file.path("config","report.yaml")
#> → DW: State initialized
#> → DW: module checksum updated:5b0f0b05ee3ac7336a74c564bb6efdad
#> → DW: loading data view idx: 1
#> → DW: setting name: Observations
#> → DW: module checksum updated:1ac3e0afcc601f848943f92b854b3830
#> → DW: -> filter
#> → DW: module checksum updated:67aff6e926eba73b3ecb361d26624844
#> → DW: -> filter
#> → DW: module checksum updated:0234f6d458ef7487a3b2e991b2d0957b
#> → DW: -> mutate
#> → DW: module checksum updated:37d0958f042076b974fdd3f894157822
#> → DW: loading data view idx: 2
#> → DW: setting name: PK 3mg SD IV
#> → DW: module checksum updated:4e7ca05728d66df3adfcf87387f9543a
#> → DW: -> filter
#> → DW: module checksum updated:2d95bc56262f46b7f135dd33fc4722b3
#> → DW: -> filter
#> → DW: module checksum updated:b8a30837145926d2d9cc6f788c10b7ed
#> → DW: -> filter
#> → DW: module checksum updated:24b554ee8736ebc84979c896ac2e93c3
#> → DW: -> filter
#> → DW: module checksum updated:daad88263faf7cbf90871ed00a0dd275
#> → DW: loading data view idx: 3
#> → DW: setting name: PK 3mg SD IV (NCA)
#> → DW: module checksum updated:a7b3ea35cdba272682716aa4619d3983
#> → DW: -> filter
#> → DW: module checksum updated:e8d2f77c0bd731995d845ee8be623e22
#> → DW: -> filter
#> → DW: module checksum updated:24cc7b591ca756a0abf560fb5295e04d
#> → DW: -> filter
#> → DW: module checksum updated:f79ef26bdb4dac420c24650b9e96f721
#> → DW: loading data view idx: 4
#> → DW: setting name: PKPD 3mg SD IV (NCA)
#> → DW: module checksum updated:c737e8b3a28ba600a83ddf58a969c90a
#> → DW: -> filter
#> → DW: module checksum updated:4c0d054f8ec47ae97fd1c650d8ddad55
#> → DW: -> filter
#> → DW: module checksum updated:1e3d65ec1bd6ee5850d67bd2250e3223
#> → DW: -> filter
#> → DW: module checksum updated:1e3d65ec1bd6ee5850d67bd2250e3223
#> → DW: module isgood: TRUE
#> → NCA: including file
#> → NCA: source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → NCA: dest: file.path("config","report.docx")
#> → NCA: including file
#> → NCA: source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → NCA: dest: file.path("config","report.pptx")
#> → NCA: including file
#> → NCA: source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → NCA: dest: file.path("config","report.yaml")
#> ✖ NCA: Parameter specified in YAML is not a valid PKNCA parameter: sparse_se
#> ✖ NCA: Parameter specified in YAML is not a valid PKNCA parameter: sparse_df
#> → NCA: including file
#> → NCA: source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → NCA: dest: file.path("config","report.docx")
#> → NCA: including file
#> → NCA: source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → NCA: dest: file.path("config","report.pptx")
#> → NCA: including file
#> → NCA: source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → NCA: dest: file.path("config","report.yaml")
#> → NCA: State initialized
#> → NCA: State initialized
#> → NCA: loading element idx: 1
#> → NCA: -> setting name: PK Example
#> → NCA: -> notes found and set
#> → NCA: -> setting data source: DW_myDS_3
#> → NCA: NCA_add_int: append
#> → NCA: NCA_add_int: append
#> → NCA: added element idx: 1
#> → NCA: loading element idx: 2
#> → NCA: -> setting name: PK/PD Example
#> → NCA: -> notes found and set
#> → NCA: -> setting data source: DW_myDS_4
#> → NCA: NCA_add_int: append
#> → NCA: NCA_add_int: append
#> → NCA: added element idx: 2
#> → NCA: module isgood: TRUE
state = sess_res$state
# Current active table:
res = NCA_fetch_current_obj(state, "table")
res$ft
Time
Analyte
Concentration (ng/mL) by ID
(day)
1
2
3
4
5
6
0
BM_ng_ml
1250
1030
831
1170
1140
868
1
BM_ng_ml
1650
1160
932
1340
1500
988
2
BM_ng_ml
1950
1240
1010
1450
1740
1080
21
BM_ng_ml
2280
1500
1130
1690
2190
1310
28
BM_ng_ml
2070
1440
1070
1610
2060
1250
3
BM_ng_ml
2170
1300
1070
1530
1900
1140
35
BM_ng_ml
1890
1380
1010
1530
1930
1190
4
BM_ng_ml
2330
1340
1110
1590
2020
1200
42
BM_ng_ml
1760
1320
972
1460
1810
1130
7
BM_ng_ml
2580
1430
1180
1690
2200
1290
0
C_ng_ml
BLQ
BLQ
BLQ
BLQ
BLQ
BLQ
1
C_ng_ml
690
750
670
638
855
611
2
C_ng_ml
588
577
576
517
668
521
21
C_ng_ml
123
274
139
173
228
194
28
C_ng_ml
95.5
220
104
135
188
155
3
C_ng_ml
506
508
501
438
549
456
35
C_ng_ml
75.8
177
77.8
105
156
125
4
C_ng_ml
438
476
441
384
472
409
42
C_ng_ml
60.6
142
58.6
82.2
128
100
7
C_ng_ml
303
425
320
300
360
325
# Current active figure:
res = NCA_fetch_current_obj(state, "figure")
res$ggplot
