Populates the supplied session variable for testing.
Usage
CTS_test_mksession(session = list(), full = FALSE)Value
The CTS portion of the all_sess_res returned from FM_app_preload
Examples
# \donttest{
session = shiny::MockShinySession$new()
sess_res = CTS_test_mksession(session=session)
#> → ASM: including file
#> → ASM: source: file.path(system.file(package="onbrand"), "templates", "report.docx")
#> → ASM: dest: file.path("config","report.docx")
#> → ASM: including file
#> → ASM: source: file.path(system.file(package="onbrand"), "templates", "report.pptx")
#> → ASM: dest: file.path("config","report.pptx")
#> → ASM: including file
#> → ASM: source: file.path(system.file(package="onbrand"), "templates", "report.yaml")
#> → ASM: dest: file.path("config","report.yaml")
#> → ASM: State initialized
#> → ASM: setting word placeholders:
#> → ASM: -> setting docx ph: HEADERLEFT = left header
#> → ASM: -> setting docx ph: HEADERRIGHT = right header
#> → ASM: -> setting docx ph: FOOTERLEFT = left footer
#> → ASM: module isgood: TRUE
#> ! MB: User-defined model: /Users/jmh/projects/ruminate/github/ruminate/docs/reference/user_model.R not found (skipping)
#> ! MB: User-defined model: /Users/jmh/projects/ruminate/github/ruminate/docs/reference/user_model.ctl not found (skipping)
#> → MB: module checksum updated:f7de2055542d3ff1b085fafc2d30a1f8
#> → MB: State initialized
#> → MB: loading model idx: 1
#>
#>
#> ℹ parameter labels from comments are typically ignored in non-interactive mode
#> ℹ Need to run with the source intact to parse comments
#> → MB: model checksum updated: 253220456903aa9318562f90f323b602
#> → MB: module checksum updated:ca1b0d5297cb2d301b283652e44bfe66
#>
#>
#> ℹ parameter labels from comments are typically ignored in non-interactive mode
#> ℹ Need to run with the source intact to parse comments
#> → MB: model checksum updated: a73d02f5d4aefec7cca5eb41fd4464bb
#> → MB: module checksum updated:b1b9cab705ad132f91924399d58ff2aa
#> → MB: -> setting name: One compartment model
#> → MB: -> setting time scale: hours
#> → MB: -> setting base from: user
#> → MB: -> setting catalog selection:
#> → MB: -> setting base model id: manual
#> → MB: -> setting base model name: manual
#> → MB: model checksum updated: 5c70d5d71f559e99d6bc19481ec5c18e
#> → MB: module checksum updated:011f58d4d3d9c17d5a7072ecbfbe6af4
#> → MB: added element idx: 1
#> → MB: loading model idx: 2
#>
#>
#> ℹ parameter labels from comments are typically ignored in non-interactive mode
#> ℹ Need to run with the source intact to parse comments
#> → MB: model checksum updated: 39f0a31163780922ca1c83be51e9e3f7
#> → MB: module checksum updated:d7fb06cf62957a13450cb751ee4b2acd
#> → MB: -> setting name: PK Biomarker
#> → MB: -> setting time scale: days
#> → MB: -> setting base from: user
#> → MB: -> setting catalog selection:
#> → MB: -> setting base model id: manual
#> → MB: -> setting base model name: manual
#> → MB: model checksum updated: 4c7b7c2c8387d2173cabe00beae34705
#> → MB: module checksum updated:55e65b8c2d4d94583cf2337f05c12e52
#> → MB: added element idx: 2
#> → MB: module isgood: TRUE
#> → CTS: source model change detected
#> → CTS: > covariates reset
#> → CTS: cohort checksum updated: 563bb62ab9ec6839b84077667134bfa2
#> → CTS: module checksum updated: c4f71483a5d7f73722c581851bdc21b2
#> → CTS: State initialized
#> → CTS: loading element idx: 1
#> → CTS: setting cohort name: Single dose
#> → CTS: setting model source: MB_obj_1_rx
#> → CTS: setting trial options:
#> → CTS: - nsub: 3
#> → CTS: - visit_times: 0
#> → CTS: - trial_end: 100
#> → CTS: - fpage: 1
#> → CTS: - dvcols: Cc
#> → CTS: - time_scale:
#> → CTS: - tc_dim: d2x4
#> → CTS: - evplot: 1
#> → CTS: - cts_config_atol: 1e-8
#> → CTS: - cts_config_rtol: 1e-6
#> → CTS: - cts_config_sigdig: NULL
#> → CTS: - cts_config_seed: 5446
#> → CTS: - cts_config_nsteps: 5
#> → CTS: - cts_config_preamble:
#> → CTS: cohort checksum updated: 20cd9353c5dd17a5077681fb60215aa0
#> → CTS: module checksum updated: fdb0c7f451ccad5ec2a503da056dbfc8
#> → CTS: adding rule: first_dose
#> → CTS: add rule success
#> → CTS: rule added
#> → CTS: cohort checksum updated: eaf3dfe5fe9d3e96d65106fc6d1749b4
#> → CTS: module checksum updated: dce72a4c1ba9c0c8dc93a5b118d8271a
#>
#>
#>
#>
#> Warning: multi-subject simulation without without 'omega'
#>
#>
#> Warning: multi-subject simulation without without 'omega'
#> → CTS: simulation complete
#> → CTS: plot complete
#> → CTS: cohort checksum updated: f96b805e3448db6c41561d232566548e
#> → CTS: module checksum updated: 53c367cfb179013040796bb0dc8e952b
#> → CTS: added element idx: 1
#> → CTS: module isgood: TRUE
# }